Pseudomonas aeruginosa PAO1, PA0792 (prpD)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0044248 cellular catabolic process
ISS
Inferred from Sequence or Structural Similarity 		ECO:0000044
sequence similarity evidence
Biological Process GO:0015976 carbon utilization
ISS
Inferred from Sequence or Structural Similarity 		ECO:0000044
sequence similarity evidence
Biological Process GO:0019679 propionate metabolic process, methylcitrate cycle
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02330
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0051537 2 iron, 2 sulfur cluster binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02330
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016829 lyase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR16943
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0047547 2-methylcitrate dehydratase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02330
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Carbon compound catabolism Other PAO1 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pae00640 Propanoate metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF03972 MmgE/PrpD N-terminal domain IPR045336 MmgE/PrpD, N-terminal 18 268 5.1E-85
NCBIfam TIGR02330 JCVI: 2-methylcitrate dehydratase IPR012705 2-methylcitrate dehydratase PrpD 14 494 0.0
Pfam PF19305 MmgE/PrpD C-terminal domain IPR045337 MmgE/PrpD, C-terminal 300 476 1.6E-52
SUPERFAMILY SSF103378 2-methylcitrate dehydratase PrpD IPR036148 MmgE/PrpD superfamily 13 492 0.0
Gene3D G3DSA:3.30.1330.120 - IPR042188 MmgE/PrpD superfamily, domain 2 298 437 0.0
PANTHER PTHR16943 2-METHYLCITRATE DEHYDRATASE-RELATED IPR005656 MmgE/PrpD 8 492 0.0
Gene3D G3DSA:1.10.4100.10 - IPR042183 MmgE/PrpD superfamily, domain 1 16 481 0.0

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.