Pseudomonas aeruginosa PAO1, PA1142

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Molecular Function	GO:0003677	DNA binding	ISM Inferred from Sequence Model Term mapped from: InterPro:SM00866	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0003700	DNA-binding transcription factor activity	ISM Inferred from Sequence Model Term mapped from: InterPro:cd07377	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006355	regulation of transcription, DNA-templated	ISM Inferred from Sequence Model Term mapped from: InterPro:cd07377	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other PAO1 genes in this class

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
SUPERFAMILY	SSF64288	Chorismate lyase-like	IPR028978	Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily	59	235	1.11E-41
CDD	cd07377	WHTH_GntR	IPR000524	Transcription regulator HTH, GntR	12	72	2.09961E-20
SMART	SM00866	UTRA_2	IPR011663	UbiC transcription regulator-associated	92	231	2.2E-30
PANTHER	PTHR44846	MANNOSYL-D-GLYCERATE TRANSPORT/METABOLISM SYSTEM REPRESSOR MNGR-RELATED	-	-	1	235	1.3E-53
SUPERFAMILY	SSF46785	Winged helix DNA-binding domain	IPR036390	Winged helix DNA-binding domain superfamily	10	81	8.35E-21
Pfam	PF07702	UTRA domain	IPR011663	UbiC transcription regulator-associated	92	230	1.0E-37
Gene3D	G3DSA:3.40.1410.10	-	IPR028978	Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily	79	237	1.8E-35
SMART	SM00345	gntr3	IPR000524	Transcription regulator HTH, GntR	12	71	5.1E-19
PRINTS	PR00035	GntR bacterial regulatory protein HTH signature	IPR000524	Transcription regulator HTH, GntR	31	45	1.1E-9
FunFam	G3DSA:1.10.10.10:FF:000287	Phosphonate utilization transcriptional regulator PhnR	-	-	6	76	4.6E-35
PRINTS	PR00035	GntR bacterial regulatory protein HTH signature	IPR000524	Transcription regulator HTH, GntR	45	61	1.1E-9
Pfam	PF00392	Bacterial regulatory proteins, gntR family	IPR000524	Transcription regulator HTH, GntR	12	71	6.4E-19
Gene3D	G3DSA:1.10.10.10	-	IPR036388	Winged helix-like DNA-binding domain superfamily	3	74	1.7E-21

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.