Pseudomonas aeruginosa PAO1, PA3817
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Molecular Function | GO:0003723 | RNA binding |
Inferred from Sequence Model
Term mapped from: InterPro:PF00588
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Molecular Function | GO:0008173 | RNA methyltransferase activity |
Inferred from Sequence Model
Term mapped from: InterPro:PTHR42786
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Biological Process | GO:0006396 | RNA processing |
Inferred from Sequence Model
Term mapped from: InterPro:PTHR42786
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
|
Pathways
| Database | Xref | Pathway | Version | Evidence | PMID |
|---|---|---|---|---|---|
| PseudoCyc | CODH-PWY | reductive acetyl coenzyme A pathway | 19.5 |
ECO:0000250
sequence similarity evidence used in manual assertion |
12867747 |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF75217 | alpha/beta knot | IPR029028 | Alpha/beta knot methyltransferases | 4 | 170 | 4.77E-38 |
| NCBIfam | TIGR00050 | JCVI: TrmJ/YjtD family RNA methyltransferase | IPR004384 | RNA methyltransferase TrmJ/LasT | 1 | 245 | 4.4E-75 |
| PANTHER | PTHR42786 | TRNA/RRNA METHYLTRANSFERASE | IPR004384 | RNA methyltransferase TrmJ/LasT | 2 | 247 | 1.0E-66 |
| Gene3D | G3DSA:1.10.8.590 | - | - | - | 178 | 255 | 7.2E-22 |
| FunFam | G3DSA:1.10.8.590:FF:000004 | tRNA (cytidine/uridine/adenosine-2'-O-)-methyltransferase TrmJ | - | - | 178 | 255 | 6.9E-41 |
| CDD | cd18093 | SpoU-like_TrmJ | - | - | 5 | 156 | 6.23124E-74 |
| PIRSF | PIRSF004808 | LasT | IPR004384 | RNA methyltransferase TrmJ/LasT | 1 | 251 | 7.0E-72 |
| FunFam | G3DSA:3.40.1280.10:FF:000006 | Uncharacterized tRNA/rRNA methyltransferase HI_0380 | - | - | 1 | 173 | 2.7E-79 |
| Pfam | PF00588 | SpoU rRNA Methylase family | IPR001537 | tRNA/rRNA methyltransferase, SpoU type | 5 | 155 | 1.3E-33 |
| Gene3D | G3DSA:3.40.1280.10 | - | IPR029026 | tRNA (guanine-N1-)-methyltransferase, N-terminal | 1 | 177 | 9.1E-56 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.