Pseudomonas aeruginosa PAO1, PA3818
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Upstream Motifs
*Up to 500bp upstream
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| AmrZ binding site | 4274440 | 4274452 | + |
ECO:0000314
direct assay evidence used in manual assertion |
24603766 | Details |
| Shine-Dalgarno sequence | 4274361 | 4274364 | - |
ECO:0000256
match to sequence model evidence used in automatic assertion |
Details | |
| Shine-Dalgarno sequence | 4274489 | 4274491 | + |
ECO:0000256
match to sequence model evidence used in automatic assertion |
Details |
Motifs annotated in this feature
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| Inverted repeat: TGGCGTACCG-N64-CGGTACGCCA | 4274789 | 4274872 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |
Downstream motifs
*Up to 500bp downstream
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| Palindrome | 4275371 | 4275404 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |
| Inverted repeat: GCCGGTACCGCC-N42-GGCGGTACCGGC | 4275692 | 4275757 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |
| Rho-independent transcription terminator TERM 992 | 4275336 | 4275352 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
17313685 | Details |
| Rho-independent transcription terminator TERM 994 | 4275372 | 4275403 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
17313685 | Details |
| Rho-independent transcription terminator TERM 995 | 4275372 | 4275403 | - |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
17313685 | Details |