Pseudomonas aeruginosa PAO1, PA3830

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0043565 sequence-specific DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00342
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00342
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00342
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other PAO1 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
CDD cd06124 cupin_NimR-like_N - - 28 121 2.90809E-31
Pfam PF07883 Cupin domain IPR013096 Cupin 2, conserved barrel 33 93 1.3E-6
SUPERFAMILY SSF46689 Homeodomain-like IPR009057 Homeobox-like domain superfamily 218 263 1.39E-7
SUPERFAMILY SSF51182 RmlC-like cupins IPR011051 RmlC-like cupin domain superfamily 12 219 5.56E-25
Pfam PF12833 Helix-turn-helix domain IPR018060 DNA binding HTH domain, AraC-type 188 264 3.9E-22
PRINTS PR00032 AraC bacterial regulatory protein HTH signature IPR020449 Transcription regulator HTH, AraC- type 233 248 7.9E-5
FunFam G3DSA:1.10.10.60:FF:000132 AraC family transcriptional regulator - - 163 267 9.3E-40
Gene3D G3DSA:1.10.10.60 - - - 166 268 1.8E-21
Gene3D G3DSA:2.60.120.10 Jelly Rolls IPR014710 RmlC-like jelly roll fold 9 102 4.5E-9
PRINTS PR00032 AraC bacterial regulatory protein HTH signature IPR020449 Transcription regulator HTH, AraC- type 248 264 7.9E-5
MobiDBLite mobidb-lite consensus disorder prediction - - 1 20 -
SMART SM00342 aracneu4 IPR018060 DNA binding HTH domain, AraC-type 182 264 5.4E-21
PANTHER PTHR11019 HTH-TYPE TRANSCRIPTIONAL REGULATOR NIMR - - 13 265 4.7E-89

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.