Pseudomonas aeruginosa PAO1, PA3961

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003676 nucleic acid binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00270
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004386 helicase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01970
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00270
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Putative enzymes Other PAO1 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PANTHER PTHR43519 ATP-DEPENDENT RNA HELICASE HRPB - - 3 837 0.0
NCBIfam TIGR01970 JCVI: ATP-dependent helicase HrpB IPR010225 ATP-dependent helicase HrpB 4 837 0.0
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 2 182 2.6E-54
SMART SM00490 helicmild6 IPR001650 Helicase, C-terminal 230 334 6.5E-19
CDD cd18791 SF2_C_RHA - - 184 342 2.31251E-64
Gene3D G3DSA:1.20.120.1080 - - - 378 492 9.2E-14
CDD cd17990 DEXHc_HrpB - - 4 179 3.61582E-73
Pfam PF04408 Helicase associated domain (HA2) IPR007502 Helicase-associated domain 394 454 4.7E-8
SMART SM00847 ha2_5 IPR007502 Helicase-associated domain 393 496 5.5E-17
SMART SM00487 ultradead3 IPR014001 Helicase superfamily 1/2, ATP-binding domain 5 189 2.1E-17
Pfam PF00271 Helicase conserved C-terminal domain IPR001650 Helicase, C-terminal 210 333 3.1E-14
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 183 351 9.4E-56
Pfam PF00270 DEAD/DEAH box helicase IPR011545 DEAD/DEAH box helicase domain 19 165 5.6E-7
FunFam G3DSA:1.20.120.1080:FF:000055 ATP-dependent helicase HrpB - - 377 489 7.4E-36
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 30 437 4.92E-53
PIRSF PIRSF005496 ATP_hel_HrpB IPR010225 ATP-dependent helicase HrpB 1 838 0.0
FunFam G3DSA:3.40.50.300:FF:002125 ATP-dependent helicase HrpB - - 1 182 4.3E-67
Pfam PF08482 ATP-dependent helicase C-terminal IPR013689 ATP-dependent RNA helicase HrpB, C-terminal 694 825 2.4E-52

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.