Pseudomonas aeruginosa PAO1, PA3997 (lipB)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006554 lysine catabolic process
ISS
Inferred from Sequence or Structural Similarity 		ECO:0000044
sequence similarity evidence
Biological Process GO:0006744 ubiquinone biosynthetic process
ISS
Inferred from Sequence or Structural Similarity 		ECO:0000044
sequence similarity evidence
Biological Process GO:0046656 folic acid biosynthetic process
ISS
Inferred from Sequence or Structural Similarity 		ECO:0000044
sequence similarity evidence
Molecular Function GO:0004619 phosphoglycerate mutase activity
ISS
Inferred from Sequence or Structural Similarity 		ECO:0000044
sequence similarity evidence
Biological Process GO:0051188 obsolete cofactor biosynthetic process
ISS
Inferred from Sequence or Structural Similarity 		ECO:0000044
sequence similarity evidence
Biological Process GO:0006520 cellular amino acid metabolic process
ISS
Inferred from Sequence or Structural Similarity 		ECO:0000044
sequence similarity evidence
Biological Process GO:0009249 protein lipoylation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd16444
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0033819 lipoyl(octanoyl) transferase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd16444
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Amino acid biosynthesis and metabolism Other PAO1 genes in this class
Biosynthesis of cofactors, prosthetic groups and carriers Other PAO1 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
PseudoCAP Folate biosynthesis ECO:0000037
not_recorded
PseudoCAP Lysine degradation ECO:0000037
not_recorded
KEGG pae00785 Lipoic acid metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pae01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
PseudoCAP Ubiquinone biosynthesis ECO:0000037
not_recorded

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF55681 Class II aaRS and biotin synthetases IPR045864 Class II Aminoacyl-tRNA synthetase/Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL) 6 204 2.57E-66
NCBIfam TIGR00214 JCVI: lipoyl(octanoyl) transferase LipB IPR000544 Octanoyltransferase 28 194 4.6E-62
PIRSF PIRSF016262 LPLase IPR000544 Octanoyltransferase 4 215 1.7E-57
Hamap MF_00013 Octanoyltransferase [lipB]. IPR000544 Octanoyltransferase 4 205 37.337898
Gene3D G3DSA:3.30.930.10 Bira Bifunctional Protein; Domain 2 IPR045864 Class II Aminoacyl-tRNA synthetase/Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL) 3 202 5.7E-62
FunFam G3DSA:3.30.930.10:FF:000020 Octanoyltransferase - - 7 202 8.6E-92
PANTHER PTHR10993 OCTANOYLTRANSFERASE - - 8 203 1.3E-47
CDD cd16444 LipB IPR000544 Octanoyltransferase 7 202 2.02555E-111

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.