Pseudomonas aeruginosa PAO1, PA4021 (eatR)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0043565 sequence-specific DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR01590
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016887 ATPase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00382
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008134 transcription factor binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00158
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00158
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01590
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00158
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other PAO1 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:1.10.8.60 - - - 505 578 2.4E-13
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 235 311 1.57E-8
SUPERFAMILY SSF46689 Homeodomain-like IPR009057 Homeobox-like domain superfamily 542 638 9.86E-15
FunFam G3DSA:3.40.50.300:FF:000006 DNA-binding transcriptional regulator NtrC - - 333 503 3.0E-62
SMART SM00382 AAA_5 IPR003593 AAA+ ATPase domain 353 496 1.2E-8
Gene3D G3DSA:3.30.450.40 - IPR029016 GAF-like domain superfamily 24 209 6.2E-51
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 346 571 3.88E-53
Pfam PF02954 Bacterial regulatory protein, Fis family IPR002197 DNA binding HTH domain, Fis-type 596 635 2.0E-13
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 331 504 2.3E-55
PRINTS PR01590 FIS bacterial regulatory protein HTH signature IPR002197 DNA binding HTH domain, Fis-type 619 639 1.6E-7
Gene3D G3DSA:3.30.450.20 PAS domain - - 235 311 1.0E-6
CDD cd00009 AAA - - 336 495 1.82568E-23
Pfam PF01590 GAF domain IPR003018 GAF domain 73 194 2.7E-7
CDD cd00130 PAS IPR000014 PAS domain 235 315 3.82235E-4
PANTHER PTHR32071 TRANSCRIPTIONAL REGULATORY PROTEIN - - 315 641 9.2E-107
Pfam PF00158 Sigma-54 interaction domain IPR002078 RNA polymerase sigma factor 54 interaction domain 339 498 4.1E-59
SUPERFAMILY SSF55781 GAF domain-like - - 68 199 3.3E-9
Gene3D G3DSA:1.10.10.60 - - - 594 640 2.6E-12
PRINTS PR01590 FIS bacterial regulatory protein HTH signature IPR002197 DNA binding HTH domain, Fis-type 602 619 1.6E-7

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.