Pseudomonas aeruginosa PAO1, PA4172

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003824 catalytic activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF03372
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008311 double-stranded DNA 3'-5' exodeoxyribonuclease activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR43250
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006281 DNA repair
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00633
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004518 nuclease activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00633
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

DNA replication, recombination, modification and repair Other PAO1 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pae03410 Base excision repair 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF56219 DNase I-like IPR036691 Endonuclease/exonuclease/phosphatase superfamily 4 258 4.19E-79
PANTHER PTHR43250 - IPR037493 Exodeoxyribonuclease III-like 1 260 2.5E-111
Pfam PF03372 Endonuclease/Exonuclease/phosphatase family IPR005135 Endonuclease/exonuclease/phosphatase 7 251 2.6E-21
Gene3D G3DSA:3.60.10.10 Endonuclease/exonuclease/phosphatase IPR036691 Endonuclease/exonuclease/phosphatase superfamily 4 259 1.4E-71
NCBIfam TIGR00633 JCVI: exodeoxyribonuclease III IPR004808 AP endonuclease 1 4 258 1.9E-69
NCBIfam TIGR00195 JCVI: exodeoxyribonuclease III - - 4 257 9.5E-70
CDD cd09086 ExoIII-like_AP-endo IPR037493 Exodeoxyribonuclease III-like 4 258 0.0

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.