Pseudomonas aeruginosa UCBPP-PA14, PA14_04930 (rpoH)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF04545
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF04545
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006352 DNA-templated transcription, initiation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF04545
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016987 sigma factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02392
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00140
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PRINTS PR00046 Major sigma-70 factor signature IPR000943 RNA polymerase sigma-70 252 267 6.8E-18
PANTHER PTHR30376 SIGMA FACTOR RPOH HEAT SHOCK RELATED - - 7 282 2.0E-119
NCBIfam TIGR02937 JCVI: sigma-70 family RNA polymerase sigma factor IPR014284 RNA polymerase sigma-70 like domain 49 280 4.5E-31
Pfam PF04542 Sigma-70 region 2 IPR007627 RNA polymerase sigma-70 region 2 55 123 7.8E-16
Gene3D G3DSA:1.20.120.1810 - - - 16 123 2.4E-28
Coils Coil Coil - - 253 273 -
SUPERFAMILY SSF88946 Sigma2 domain of RNA polymerase sigma factors IPR013325 RNA polymerase sigma factor, region 2 15 123 2.09E-39
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 211 282 1.3E-14
PRINTS PR00046 Major sigma-70 factor signature IPR000943 RNA polymerase sigma-70 78 91 6.8E-18
Pfam PF04545 Sigma-70, region 4 IPR007630 RNA polymerase sigma-70 region 4 229 279 5.3E-16
Pfam PF00140 Sigma-70 factor, region 1.2 IPR009042 RNA polymerase sigma-70 region 1.2 17 41 1.1E-5
PRINTS PR00046 Major sigma-70 factor signature IPR000943 RNA polymerase sigma-70 267 278 6.8E-18
PRINTS PR00046 Major sigma-70 factor signature IPR000943 RNA polymerase sigma-70 233 245 6.8E-18
FunFam G3DSA:1.10.10.10:FF:000285 RNA polymerase sigma factor RpoH - - 213 282 5.0E-33
FunFam G3DSA:1.20.120.1810:FF:000001 RNA polymerase sigma factor RpoH - - 15 123 2.0E-61
NCBIfam TIGR02392 JCVI: RNA polymerase sigma factor RpoH IPR012759 RNA polymerase sigma factor RpoH, proteobacteria 16 282 9.9E-124
Hamap MF_00961 RNA polymerase sigma factor RpoH [rpoH]. IPR012759 RNA polymerase sigma factor RpoH, proteobacteria 2 284 54.24894
SUPERFAMILY SSF88659 Sigma3 and sigma4 domains of RNA polymerase sigma factors IPR013324 RNA polymerase sigma factor, region 3/4-like 197 282 3.18E-18

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.