Pseudomonas aeruginosa UCBPP-PA14, PA14_06880

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00039
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00039
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 39 50 1.2E-9
Gene3D G3DSA:3.40.190.290 - - - 92 290 1.1E-38
CDD cd05466 PBP2_LTTR_substrate - - 92 288 2.45897E-37
Pfam PF03466 LysR substrate binding domain IPR005119 LysR, substrate-binding 89 288 4.6E-39
Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IPR000847 Transcription regulator HTH, LysR 3 61 2.8E-21
PANTHER PTHR30346 TRANSCRIPTIONAL DUAL REGULATOR HCAR-RELATED - - 1 288 6.8E-69
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 18 29 1.2E-9
SUPERFAMILY SSF46785 Winged helix DNA-binding domain IPR036390 Winged helix DNA-binding domain superfamily 1 82 9.62E-24
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 1 84 5.7E-27
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 29 39 1.2E-9
SUPERFAMILY SSF53850 Periplasmic binding protein-like II - - 91 291 9.93E-34
FunFam G3DSA:1.10.10.10:FF:000001 LysR family transcriptional regulator - - 1 84 3.3E-24

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.