Pseudomonas aeruginosa UCBPP-PA14, PA14_08730 (rplA)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006412 translation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF002155
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003735 structural constituent of ribosome
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF002155
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0015934 large ribosomal subunit
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF002155
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003723 RNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF002155
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Translation, post-translational modification, degradation Other UCBPP-PA14 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pau03010 Ribosome 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF56808 Ribosomal protein L1 IPR023674 Ribosomal protein uL1-like 6 225 6.93E-79
Hamap MF_01318_B 50S ribosomal protein L1 [rplA]. IPR005878 Large ribosomal subunit protein uL1, bacterial-type 2 229 42.013737
PIRSF PIRSF002155 RPL1p_RPL1a_RPL10e_RPL1o IPR002143 Large ribosomal subunit protein uL1 1 227 4.3E-75
Gene3D G3DSA:3.30.190.20 - - - 21 225 3.8E-85
Gene3D G3DSA:3.40.50.790 - IPR016095 Large ribosomal subunit protein uL1, 3-layer alpha/beta-sandwich domain 68 159 3.8E-85
NCBIfam TIGR01169 JCVI: 50S ribosomal protein L1 IPR005878 Large ribosomal subunit protein uL1, bacterial-type 3 228 5.7E-102
Pfam PF00687 Ribosomal protein L1p/L10e family IPR028364 Ribosomal protein uL1/ribosomal biogenesis protein 34 220 6.6E-48
FunFam G3DSA:3.40.50.790:FF:000001 50S ribosomal protein L1 - - 68 159 4.4E-39
PANTHER PTHR36427 54S RIBOSOMAL PROTEIN L1, MITOCHONDRIAL - - 15 229 1.8E-78
CDD cd00403 Ribosomal_L1 IPR028364 Ribosomal protein uL1/ribosomal biogenesis protein 24 224 2.56431E-66

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.