Pseudomonas aeruginosa UCBPP-PA14, PA14_08760 (rpoB)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006351 transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:2.40.270.10
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003899 DNA-directed 5'-3' RNA polymerase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:2.40.270.10
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0032549 ribonucleoside binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR20856
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:2.40.270.10
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcription, RNA processing and degradation Other UCBPP-PA14 genes in this class
Translation, post-translational modification, degradation Other UCBPP-PA14 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pau01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pau03020 RNA polymerase 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pau00240 Pyrimidine metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pau00230 Purine metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF00562 RNA polymerase Rpb2, domain 6 IPR007120 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain 722 1279 0.0
FunFam G3DSA:2.40.50.150:FF:000001 DNA-directed RNA polymerase subunit beta - - 838 943 6.4E-59
Pfam PF04561 RNA polymerase Rpb2, domain 2 IPR007642 RNA polymerase Rpb2, domain 2 156 227 1.9E-8
CDD cd00653 RNA_pol_B_RPB2 IPR015712 DNA-directed RNA polymerase, subunit 2 27 1355 0.0
FunFam G3DSA:2.40.50.100:FF:000006 DNA-directed RNA polymerase subunit beta - - 721 802 3.1E-40
Gene3D G3DSA:2.40.270.10 - IPR037033 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily 1055 1257 2.0E-79
Gene3D G3DSA:3.90.1800.10 RNA polymerase alpha subunit dimerisation domain - - 1267 1320 2.5E-15
Gene3D G3DSA:2.30.150.10 - IPR042107 DNA-directed RNA polymerase, beta subunit, external 1 domain superfamily 595 661 3.0E-22
Hamap MF_01321 DNA-directed RNA polymerase subunit beta [rpoB]. IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type 13 1357 12.329388
SUPERFAMILY SSF64484 beta and beta-prime subunits of DNA dependent RNA-polymerase - - 11 1357 0.0
Pfam PF04560 RNA polymerase Rpb2, domain 7 IPR007641 RNA polymerase Rpb2, domain 7 1281 1356 6.2E-27
FunFam G3DSA:3.90.1800.10:FF:000001 DNA-directed RNA polymerase subunit beta - - 1267 1320 5.5E-36
Coils Coil Coil - - 1350 1357 -
Gene3D G3DSA:2.40.50.100 - - - 719 800 2.0E-30
Pfam PF10385 RNA polymerase beta subunit external 1 domain IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain 596 661 2.4E-20
Gene3D G3DSA:3.90.1110.10 RNA polymerase Rpb2, domain 2 IPR037034 RNA polymerase Rpb2, domain 2 superfamily 302 446 1.0E-32
Gene3D G3DSA:3.90.1100.10 - - - 447 718 1.5E-79
FunFam G3DSA:3.90.1110.10:FF:000004 DNA-directed RNA polymerase subunit beta - - 343 451 1.1E-51
Gene3D G3DSA:2.40.50.150 - IPR014724 RNA polymerase Rpb2, OB-fold 822 948 9.3E-20
NCBIfam TIGR02013 JCVI: DNA-directed RNA polymerase subunit beta IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type 8 1354 0.0
FunFam G3DSA:3.90.1110.10:FF:000001 DNA-directed RNA polymerase subunit beta - - 157 272 4.4E-45
Pfam PF04563 RNA polymerase beta subunit IPR007644 RNA polymerase, beta subunit, protrusion 26 504 6.8E-41
Pfam PF04565 RNA polymerase Rpb2, domain 3 IPR007645 RNA polymerase Rpb2, domain 3 518 585 5.3E-29
Gene3D G3DSA:6.10.140.1670 - - - 949 1054 3.3E-28
Gene3D G3DSA:3.90.1100.10 - - - 18 178 5.3E-48
PANTHER PTHR20856 DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 IPR015712 DNA-directed RNA polymerase, subunit 2 600 1353 0.0
Pfam PF04561 RNA polymerase Rpb2, domain 2 IPR007642 RNA polymerase Rpb2, domain 2 359 459 1.1E-14

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.