Pseudomonas aeruginosa UCBPP-PA14, PA14_08860 (rplD)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006412 translation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF52166
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0005840 ribosome
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF52166
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003735 structural constituent of ribosome
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF52166
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcription, RNA processing and degradation Other UCBPP-PA14 genes in this class
Translation, post-translational modification, degradation Other UCBPP-PA14 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pau03010 Ribosome 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PANTHER PTHR10746 50S RIBOSOMAL PROTEIN L4 IPR013005 Large ribosomal subunit protein uL4-like 7 198 2.8E-57
NCBIfam TIGR03953 JCVI: 50S ribosomal protein L4 IPR013005 Large ribosomal subunit protein uL4-like 11 197 2.8E-73
FunFam G3DSA:3.40.1370.10:FF:000001 50S ribosomal protein L4 - - 1 200 5.9E-106
MobiDBLite mobidb-lite consensus disorder prediction - - 38 67 -
Hamap MF_01328_B 50S ribosomal protein L4 [rplD]. IPR013005 Large ribosomal subunit protein uL4-like 6 200 34.093365
Pfam PF00573 Ribosomal protein L4/L1 family IPR002136 Large ribosomal subunit protein uL4 11 197 2.3E-63
SUPERFAMILY SSF52166 Ribosomal protein L4 IPR023574 Large ribosomal subunit protein uL4 domain superfamily 6 199 1.44E-71
Gene3D G3DSA:3.40.1370.10 - IPR023574 Large ribosomal subunit protein uL4 domain superfamily 2 199 7.4E-69

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.