Pseudomonas aeruginosa UCBPP-PA14, PA14_08880 (rplB)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0016740 transferase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_01320_B
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0015934 large ribosomal subunit
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_01320_B
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006412 translation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM01382
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003723 RNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_01320_B
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003735 structural constituent of ribosome
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM01382
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0005840 ribosome
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM01382
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Translation, post-translational modification, degradation Other UCBPP-PA14 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pau03010 Ribosome 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Hamap MF_01320_B 50S ribosomal protein L2 [rplB]. IPR005880 Large ribosomal subunit protein uL2, bacterial/organellar-type 1 273 46.773567
Pfam PF00181 Ribosomal Proteins L2, RNA binding domain IPR022666 Large ribosomal subunit protein uL2, RNA-binding domain 42 117 1.2E-32
FunFam G3DSA:2.40.50.140:FF:000003 50S ribosomal protein L2 - - 1 114 1.0E-54
FunFam G3DSA:2.30.30.30:FF:000001 50S ribosomal protein L2 - - 118 195 1.6E-36
Gene3D G3DSA:4.10.950.10 Ribosomal protein L2, domain 3 IPR014726 Large ribosomal subunit protein uL2, domain 3 197 273 9.5E-35
PIRSF PIRSF002158 RPL2p_RPL2a_RPL8e_RPL2o IPR002171 Large ribosomal subunit protein uL2 12 273 2.3E-100
MobiDBLite mobidb-lite consensus disorder prediction - - 223 273 -
SUPERFAMILY SSF50104 Translation proteins SH3-like domain IPR008991 Translation protein SH3-like domain superfamily 127 272 1.32E-60
Pfam PF03947 Ribosomal Proteins L2, C-terminal domain IPR022669 Large ribosomal subunit protein uL2, C-terminal 125 250 4.1E-56
Gene3D G3DSA:2.30.30.30 - IPR014722 Large ribosomal subunit protein uL2, domain 2 118 196 8.7E-32
PANTHER PTHR13691 RIBOSOMAL PROTEIN L2 IPR002171 Large ribosomal subunit protein uL2 28 271 3.0E-75
NCBIfam TIGR01171 JCVI: 50S ribosomal protein L2 IPR005880 Large ribosomal subunit protein uL2, bacterial/organellar-type 3 273 5.9E-128
FunFam G3DSA:4.10.950.10:FF:000001 50S ribosomal protein L2 - - 196 273 3.9E-37
MobiDBLite mobidb-lite consensus disorder prediction - - 34 54 -
SMART SM01383 Ribosomal_L2_2 IPR002171 Large ribosomal subunit protein uL2 42 118 1.3E-43
Gene3D G3DSA:2.40.50.140 - IPR012340 Nucleic acid-binding, OB-fold 1 114 1.5E-48
SMART SM01382 Ribosomal_L2_C_2 IPR022669 Large ribosomal subunit protein uL2, C-terminal 124 252 1.5E-90
SUPERFAMILY SSF50249 Nucleic acid-binding proteins IPR012340 Nucleic acid-binding, OB-fold 2 125 1.27E-47

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.