Pseudomonas aeruginosa UCBPP-PA14, PA14_09080 (rpsM)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0005840 ribosome
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_01315
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003723 RNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_01315
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003735 structural constituent of ribosome
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_01315
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003676 nucleic acid binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF46946
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006412 translation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_01315
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Translation, post-translational modification, degradation Other UCBPP-PA14 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pau03010 Ribosome 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Coils Coil Coil - - 46 66 -
PANTHER PTHR10871 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 - - 2 110 8.4E-28
Gene3D G3DSA:1.10.8.50 - - - 1 71 2.9E-29
Pfam PF00416 Ribosomal protein S13/S18 IPR001892 Small ribosomal subunit protein uS13 3 108 3.3E-33
Hamap MF_01315 30S ribosomal protein S13 [rpsM]. IPR001892 Small ribosomal subunit protein uS13 1 118 27.810005
PIRSF PIRSF002134 RPS13p_RPS13a_RPS18e_RPS13o IPR001892 Small ribosomal subunit protein uS13 1 118 5.3E-44
FunFam G3DSA:4.10.910.10:FF:000001 30S ribosomal protein S13 - - 72 118 2.6E-29
FunFam G3DSA:1.10.8.50:FF:000001 30S ribosomal protein S13 - - 1 71 3.3E-31
MobiDBLite mobidb-lite consensus disorder prediction - - 94 118 -
Gene3D G3DSA:4.10.910.10 30s ribosomal protein s13, domain 2 IPR027437 Small ribosomal subunit protein uS13, C-terminal 72 118 1.5E-26
NCBIfam TIGR03631 JCVI: 30S ribosomal protein S13 IPR019980 Small ribosomal subunit protein uS13, bacterial-type 3 114 1.5E-54
SUPERFAMILY SSF46946 S13-like H2TH domain IPR010979 Small ribosomal subunit protein uS13-like, H2TH 2 114 3.01E-48

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.