Pseudomonas aeruginosa UCBPP-PA14, PA14_09200 (ssb)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006260 DNA replication
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00621
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003697 single-stranded DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00621
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

DNA replication, recombination, modification and repair Other UCBPP-PA14 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pau03430 Mismatch repair 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pau03440 Homologous recombination 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pau03030 DNA replication 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PANTHER PTHR10302 SINGLE-STRANDED DNA-BINDING PROTEIN IPR011344 Single-stranded DNA-binding protein 3 121 6.5E-33
MobiDBLite mobidb-lite consensus disorder prediction - - 127 142 -
MobiDBLite mobidb-lite consensus disorder prediction - - 109 165 -
CDD cd04496 SSB_OBF IPR000424 Primosome PriB/single-strand DNA-binding 8 104 2.47214E-43
PIRSF PIRSF002070 SSB IPR011344 Single-stranded DNA-binding protein 1 159 7.2E-41
Pfam PF00436 Single-strand binding protein family IPR000424 Primosome PriB/single-strand DNA-binding 5 111 1.6E-42
FunFam G3DSA:2.40.50.140:FF:000065 Single-stranded DNA-binding protein - - 1 154 7.9E-76
Gene3D G3DSA:2.40.50.140 - IPR012340 Nucleic acid-binding, OB-fold 1 155 6.3E-54
SUPERFAMILY SSF50249 Nucleic acid-binding proteins IPR012340 Nucleic acid-binding, OB-fold 3 165 2.78E-61
NCBIfam TIGR00621 JCVI: single-stranded DNA-binding protein IPR011344 Single-stranded DNA-binding protein 3 165 3.5E-61
Hamap MF_00984 Single-stranded DNA-binding protein. IPR011344 Single-stranded DNA-binding protein 5 116 39.463291

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.