Pseudomonas aeruginosa UCBPP-PA14, PA14_09930

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0004518 nuclease activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00633
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003824 catalytic activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF03372
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008311 double-stranded DNA 3'-5' exodeoxyribonuclease activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR43250
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006281 DNA repair
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00633
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

DNA replication, recombination, modification and repair Other UCBPP-PA14 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pau03410 Base excision repair 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PANTHER PTHR43250 - IPR037493 Exodeoxyribonuclease III-like 1 260 3.4E-111
NCBIfam TIGR00195 JCVI: exodeoxyribonuclease III - - 4 257 6.6E-70
SUPERFAMILY SSF56219 DNase I-like IPR036691 Endonuclease/exonuclease/phosphatase superfamily 4 258 3.66E-79
NCBIfam TIGR00633 JCVI: exodeoxyribonuclease III IPR004808 AP endonuclease 1 4 258 1.6E-69
Gene3D G3DSA:3.60.10.10 Endonuclease/exonuclease/phosphatase IPR036691 Endonuclease/exonuclease/phosphatase superfamily 4 259 1.6E-71
CDD cd09086 ExoIII-like_AP-endo IPR037493 Exodeoxyribonuclease III-like 4 258 0.0
Pfam PF03372 Endonuclease/Exonuclease/phosphatase family IPR005135 Endonuclease/exonuclease/phosphatase 7 251 4.5E-21

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.