Pseudomonas aeruginosa UCBPP-PA14, PA14_10480

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR33164
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0045892 negative regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02337
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02337
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR33164
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PRINTS PR00598 Bacterial regulatory protein MarR family signature IPR000835 MarR-type HTH domain 66 81 5.6E-5
PANTHER PTHR33164 TRANSCRIPTIONAL REGULATOR, MARR FAMILY IPR039422 Transcription regulators MarR/SlyA-like 8 137 1.3E-22
FunFam G3DSA:1.10.10.10:FF:000714 MarR family transcriptional regulator - - 1 140 1.0E-98
SUPERFAMILY SSF46785 Winged helix DNA-binding domain IPR036390 Winged helix DNA-binding domain superfamily 7 137 8.85E-31
PRINTS PR00598 Bacterial regulatory protein MarR family signature IPR000835 MarR-type HTH domain 115 135 5.6E-5
PRINTS PR00598 Bacterial regulatory protein MarR family signature IPR000835 MarR-type HTH domain 85 101 5.6E-5
NCBIfam TIGR02337 JCVI: homoprotocatechuate degradation operon regulator, HpaR IPR012712 HTH-type transcriptional regulator HpaR/FarR 7 136 5.1E-61
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 1 140 1.0E-41
SMART SM00347 marrlong4 IPR000835 MarR-type HTH domain 25 125 7.7E-24
Pfam PF01047 MarR family IPR000835 MarR-type HTH domain 32 90 1.6E-15

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.