Pseudomonas aeruginosa UCBPP-PA14, PA14_10700

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0009584 detection of visible light
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR01033
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0000155 phosphorelay sensor kinase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00512
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00065
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08446
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0007165 signal transduction
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00512
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Two-component regulatory systems Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF01590 GAF domain IPR003018 GAF domain 141 289 1.0E-17
Pfam PF00360 Phytochrome region IPR013515 Phytochrome, central region 324 496 1.9E-48
Pfam PF00512 His Kinase A (phospho-acceptor) domain IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain 503 566 1.3E-11
SMART SM00065 gaf_1 IPR003018 GAF domain 139 313 6.5E-10
SUPERFAMILY SSF55781 GAF domain-like - - 311 493 4.51E-42
Gene3D G3DSA:3.30.450.40 - IPR029016 GAF-like domain superfamily 12 469 0.0
CDD cd00082 HisKA IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain 501 562 3.23531E-13
PRINTS PR01033 Phytochrome signature IPR001294 Phytochrome 339 359 2.1E-22
SMART SM00388 HisKA_10 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain 503 566 1.2E-13
Gene3D G3DSA:3.30.450.270 - IPR043150 Phytochrome, PHY domain superfamily 313 487 0.0
Pfam PF08446 PAS fold IPR013654 PAS fold-2 12 105 1.3E-10
Gene3D G3DSA:1.10.287.130 - - - 494 567 5.5E-14
PRINTS PR01033 Phytochrome signature IPR001294 Phytochrome 422 441 2.1E-22
Gene3D G3DSA:3.30.565.10 - IPR036890 Histidine kinase/HSP90-like ATPase superfamily 569 726 1.1E-27
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 6 115 2.3E-25
PRINTS PR01033 Phytochrome signature IPR001294 Phytochrome 241 262 2.1E-22
SMART SM00387 HKATPase_4 IPR003594 Histidine kinase/HSP90-like ATPase 610 721 3.4E-23
PANTHER PTHR42878 TWO-COMPONENT HISTIDINE KINASE - - 66 721 3.5E-57
Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IPR003594 Histidine kinase/HSP90-like ATPase 611 716 5.1E-13
PRINTS PR01033 Phytochrome signature IPR001294 Phytochrome 154 173 2.1E-22
SUPERFAMILY SSF55781 GAF domain-like - - 128 307 2.55E-60
SUPERFAMILY SSF55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase IPR036890 Histidine kinase/HSP90-like ATPase superfamily 556 721 1.83E-28
Gene3D G3DSA:3.30.450.20 PAS domain - - 16 244 0.0
SUPERFAMILY SSF47384 Homodimeric domain of signal transducing histidine kinase IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily 494 566 5.49E-13
PRINTS PR01033 Phytochrome signature IPR001294 Phytochrome 456 474 2.1E-22

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.