Pseudomonas aeruginosa UCBPP-PA14, PA14_12050

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006364 rRNA processing
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd18081
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008168 methyltransferase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd18081
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Hypothetical, unclassified, unknown Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF02590 Predicted SPOUT methyltransferase IPR003742 RNA methyltransferase RlmH 1 154 1.5E-47
Hamap MF_00658 Ribosomal RNA large subunit methyltransferase H [rlmH]. IPR003742 RNA methyltransferase RlmH 1 155 28.093094
PANTHER PTHR33603 METHYLTRANSFERASE IPR003742 RNA methyltransferase RlmH 1 155 8.1E-38
PIRSF PIRSF004505 MT_bac IPR003742 RNA methyltransferase RlmH 1 155 9.6E-42
CDD cd18081 RlmH-like IPR003742 RNA methyltransferase RlmH 3 155 1.88503E-64
SUPERFAMILY SSF75217 alpha/beta knot IPR029028 Alpha/beta knot methyltransferases 1 154 9.42E-48
NCBIfam TIGR00246 JCVI: 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH IPR003742 RNA methyltransferase RlmH 2 155 4.0E-60
Gene3D G3DSA:3.40.1280.10 - IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal 1 155 2.7E-49

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.