Pseudomonas aeruginosa UCBPP-PA14, PA14_12140

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00126
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00126
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:3.40.190.10 - - - 103 269 2.1E-54
SUPERFAMILY SSF53850 Periplasmic binding protein-like II - - 97 289 4.96E-30
FunFam G3DSA:3.40.190.10:FF:000347 LysR family transcriptional regulator - - 170 263 2.8E-59
FunFam G3DSA:1.10.10.10:FF:000927 LysR family transcriptional regulator - - 7 93 1.0E-56
SUPERFAMILY SSF46785 Winged helix DNA-binding domain IPR036390 Winged helix DNA-binding domain superfamily 9 119 1.58E-23
PANTHER PTHR30579 TRANSCRIPTIONAL REGULATOR - - 9 293 5.0E-76
Pfam PF03466 LysR substrate binding domain IPR005119 LysR, substrate-binding 97 285 1.0E-28
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 7 93 5.4E-23
Gene3D G3DSA:3.40.190.10 - - - 170 263 2.1E-54
Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IPR000847 Transcription regulator HTH, LysR 15 72 1.0E-17

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.