Pseudomonas aeruginosa UCBPP-PA14, PA14_13060

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00342
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00342
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0043565 sequence-specific DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00342
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF12833 Helix-turn-helix domain IPR018060 DNA binding HTH domain, AraC-type 175 250 8.4E-22
SMART SM00342 aracneu4 IPR018060 DNA binding HTH domain, AraC-type 166 248 9.1E-24
CDD cd06124 cupin_NimR-like_N - - 11 105 3.69984E-38
SUPERFAMILY SSF46689 Homeodomain-like IPR009057 Homeobox-like domain superfamily 202 250 3.54E-7
Pfam PF02311 AraC-like ligand binding domain IPR003313 AraC-type arabinose-binding/dimerisation domain 12 78 7.5E-5
Gene3D G3DSA:2.60.120.10 Jelly Rolls IPR014710 RmlC-like jelly roll fold 1 93 8.0E-8
Gene3D G3DSA:1.10.10.60 - - - 146 251 8.5E-20
FunFam G3DSA:1.10.10.60:FF:000132 AraC family transcriptional regulator - - 147 251 4.4E-38
PANTHER PTHR11019 HTH-TYPE TRANSCRIPTIONAL REGULATOR NIMR - - 5 253 1.1E-83
SUPERFAMILY SSF51182 RmlC-like cupins IPR011051 RmlC-like cupin domain superfamily 7 173 1.25E-18

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.