Pseudomonas aeruginosa UCBPP-PA14, PA14_14040 (rhl)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003724 RNA helicase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00661
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00270
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003676 nucleic acid binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00270
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcription, RNA processing and degradation Other UCBPP-PA14 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pau03018 RNA degradation 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PANTHER PTHR47959 ATP-DEPENDENT RNA HELICASE RHLE-RELATED - - 73 502 1.6E-123
MobiDBLite mobidb-lite consensus disorder prediction - - 1 102 -
Hamap MF_00661 ATP-dependent RNA helicase RhlB [rhlB]. IPR023554 ATP-dependent RNA helicase RhlB type 118 500 53.172462
CDD cd18787 SF2_C_DEAD - - 342 470 1.47446E-58
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 336 502 6.0E-48
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 87 333 1.9E-74
SMART SM00487 ultradead3 IPR014001 Helicase superfamily 1/2, ATP-binding domain 138 345 4.8E-52
MobiDBLite mobidb-lite consensus disorder prediction - - 40 102 -
Pfam PF00270 DEAD/DEAH box helicase IPR011545 DEAD/DEAH box helicase domain 143 318 2.9E-48
CDD cd00268 DEADc - - 130 331 1.31442E-92
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 194 478 1.84E-72
Pfam PF00271 Helicase conserved C-terminal domain IPR001650 Helicase, C-terminal 353 462 7.5E-30
SMART SM00490 helicmild6 IPR001650 Helicase, C-terminal 381 462 2.0E-32

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.