Pseudomonas aeruginosa UCBPP-PA14, PA14_14480

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00342
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0043565 sequence-specific DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00342
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00342
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF07883 Cupin domain IPR013096 Cupin 2, conserved barrel 33 93 1.3E-6
SMART SM00342 aracneu4 IPR018060 DNA binding HTH domain, AraC-type 182 264 5.4E-21
PRINTS PR00032 AraC bacterial regulatory protein HTH signature IPR020449 Transcription regulator HTH, AraC- type 248 264 7.9E-5
PRINTS PR00032 AraC bacterial regulatory protein HTH signature IPR020449 Transcription regulator HTH, AraC- type 233 248 7.9E-5
Pfam PF12833 Helix-turn-helix domain IPR018060 DNA binding HTH domain, AraC-type 188 264 3.9E-22
SUPERFAMILY SSF46689 Homeodomain-like IPR009057 Homeobox-like domain superfamily 218 263 1.39E-7
SUPERFAMILY SSF51182 RmlC-like cupins IPR011051 RmlC-like cupin domain superfamily 12 219 7.19E-25
Gene3D G3DSA:2.60.120.10 Jelly Rolls IPR014710 RmlC-like jelly roll fold 9 102 4.5E-9
Gene3D G3DSA:1.10.10.60 - - - 166 268 2.2E-21
PANTHER PTHR11019 HTH-TYPE TRANSCRIPTIONAL REGULATOR NIMR - - 13 265 2.3E-89
MobiDBLite mobidb-lite consensus disorder prediction - - 1 20 -
CDD cd06124 cupin_NimR-like_N - - 28 121 2.32253E-31
FunFam G3DSA:1.10.10.60:FF:000132 AraC family transcriptional regulator - - 163 267 6.7E-40

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.