Pseudomonas aeruginosa UCBPP-PA14, PA14_14690

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003723 RNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00588
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006396 RNA processing
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF004808
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008173 RNA methyltransferase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF004808
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Translation, post-translational modification, degradation Other UCBPP-PA14 genes in this class
Putative enzymes Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF75217 alpha/beta knot IPR029028 Alpha/beta knot methyltransferases 4 170 1.18E-38
Gene3D G3DSA:3.40.1280.10 - IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal 1 177 1.6E-56
NCBIfam TIGR00050 JCVI: TrmJ/YjtD family RNA methyltransferase IPR004384 RNA methyltransferase TrmJ/LasT 1 245 1.4E-75
FunFam G3DSA:3.40.1280.10:FF:000006 Uncharacterized tRNA/rRNA methyltransferase HI_0380 - - 1 173 8.3E-80
FunFam G3DSA:1.10.8.590:FF:000004 tRNA (cytidine/uridine/adenosine-2'-O-)-methyltransferase TrmJ - - 178 255 6.9E-41
Pfam PF00588 SpoU rRNA Methylase family IPR001537 tRNA/rRNA methyltransferase, SpoU type 5 155 2.7E-34
PIRSF PIRSF004808 LasT IPR004384 RNA methyltransferase TrmJ/LasT 1 251 1.3E-72
Gene3D G3DSA:1.10.8.590 - - - 178 255 7.2E-22
PANTHER PTHR42786 TRNA/RRNA METHYLTRANSFERASE IPR004384 RNA methyltransferase TrmJ/LasT 2 247 1.6E-67
CDD cd18093 SpoU-like_TrmJ - - 5 156 4.78887E-75

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.