Pseudomonas aeruginosa UCBPP-PA14, PA14_50030

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0001522 pseudouridine synthesis
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF55120
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003723 RNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00363
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0009982 pseudouridine synthase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF55120
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0009451 RNA modification
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF55120
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Hypothetical, unclassified, unknown Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF55120 Pseudouridine synthase IPR020103 Pseudouridine synthase, catalytic domain superfamily 65 235 1.52E-20
FunFam G3DSA:3.10.290.10:FF:000034 RNA-binding protein S4 - - 2 60 8.0E-32
FunFam G3DSA:3.30.2350.10:FF:000026 RNA-binding protein S4 - - 62 235 7.3E-109
PANTHER PTHR47683 PSEUDOURIDINE SYNTHASE FAMILY PROTEIN-RELATED - - 3 231 2.9E-34
Gene3D G3DSA:3.30.2350.10 Pseudouridine synthase - - 62 235 9.0E-22
SUPERFAMILY SSF55174 Alpha-L RNA-binding motif - - 5 49 1.44E-10
SMART SM00363 s4_6 IPR002942 RNA-binding S4 domain 5 65 3.4E-5
CDD cd00165 S4 - - 5 61 4.99393E-8
Gene3D G3DSA:3.10.290.10 - IPR036986 RNA-binding S4 domain superfamily 2 52 1.4E-12
Pfam PF01479 S4 domain IPR002942 RNA-binding S4 domain 6 45 9.2E-7
CDD cd02555 PSSA_1 - - 60 236 2.24425E-96

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.