Pseudomonas aeruginosa UCBPP-PA14, PA14_54010

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0043565 sequence-specific DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00342
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00342
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00342
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PRINTS PR00032 AraC bacterial regulatory protein HTH signature IPR020449 Transcription regulator HTH, AraC- type 236 252 9.2E-5
SUPERFAMILY SSF46689 Homeodomain-like IPR009057 Homeobox-like domain superfamily 211 254 5.82E-8
SMART SM00342 aracneu4 IPR018060 DNA binding HTH domain, AraC-type 170 252 3.2E-16
Pfam PF02311 AraC-like ligand binding domain IPR003313 AraC-type arabinose-binding/dimerisation domain 25 112 3.2E-8
PRINTS PR00032 AraC bacterial regulatory protein HTH signature IPR020449 Transcription regulator HTH, AraC- type 221 236 9.2E-5
PANTHER PTHR11019 HTH-TYPE TRANSCRIPTIONAL REGULATOR NIMR - - 3 255 1.9E-81
Gene3D G3DSA:1.10.10.60 - - - 158 255 7.5E-18
Gene3D G3DSA:2.60.120.10 Jelly Rolls IPR014710 RmlC-like jelly roll fold 11 92 1.8E-9
CDD cd06124 cupin_NimR-like_N - - 16 109 5.01909E-42
Pfam PF12833 Helix-turn-helix domain IPR018060 DNA binding HTH domain, AraC-type 176 252 7.7E-19
FunFam G3DSA:1.10.10.60:FF:000132 AraC family transcriptional regulator - - 151 255 7.3E-33
SUPERFAMILY SSF51182 RmlC-like cupins IPR011051 RmlC-like cupin domain superfamily 10 179 5.04E-21

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.