Pseudomonas aeruginosa UCBPP-PA14, PA14_15980 (rimM)

Gene Feature Overview

Strain	Pseudomonas aeruginosa UCBPP-PA14 (Lee et al., 2006) GCF_000014625.1|latest
Locus Tag	PA14_15980
Name	rimM
Replicon	chromosome
Genomic location	1361312 - 1361839 (+ strand)

Cross-References

RefSeq	YP_789419.1
GI	116051742
Entrez	4381630
INSDC	ABJ12978.1
NCBI Locus Tag	PA14_15980
UniParc	UPI000039617B
UniProtKB Acc	Q02RL7
UniProtKB ID	RIMM_PSEAB
UniRef100	UniRef100_B7UYK7
UniRef50	UniRef50_Q9HXQ0
UniRef90	UniRef90_Q9HXQ0

Product

Feature Type	CDS
Coding Frame	1
Product Name	16S rRNA-processing protein RimM
Synonyms
Evidence for Translation
Charge (pH 7)	-9.37
Kyte-Doolittle Hydrophobicity Value	-0.239
Molecular Weight (kDa)	19.7
Isoelectric Point (pI)	4.54

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

PDB 3D Structures

Accession	Header	Accession Date	Compound	Source	Resolution	Method	Percent Identity
2F1L	UNKNOWN FUNCTION	11/14/05	CRYSTAL STRUCTURE OF A PUTATIVE 16S RIBOSOMAL RNA PROCESSING PROTEIN RIMM (PA3744) FROM PSEUDOMONAS AERUGINOSA AT 2.46 A RESOLUTION	Pseudomonas aeruginosa	2.46	X-RAY DIFFRACTION	99.4

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 473 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG001938 (537 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PA14_15980 Search term: rimM Search term: 16S rRNA-processing protein RimM

Human Homologs

References