Pseudomonas aeruginosa PAO1, PA2273 (soxR)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006979 response to oxidative stress
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01950
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0051537 2 iron, 2 sulfur cluster binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01950
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR30204
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01950
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01950
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other PAO1 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
NCBIfam TIGR01950 JCVI: redox-sensitive transcriptional activator SoxR IPR010211 Redox-sensitive transcriptional activator SoxR 9 149 7.0E-74
CDD cd01110 HTH_SoxR IPR010211 Redox-sensitive transcriptional activator SoxR 9 147 3.12155E-85
PANTHER PTHR30204 REDOX-CYCLING DRUG-SENSING TRANSCRIPTIONAL ACTIVATOR SOXR IPR047057 MerR transcriptional regulator 6 115 2.5E-22
SMART SM00422 merrmega3 IPR000551 MerR-type HTH domain 10 78 3.8E-28
PRINTS PR00040 MerR bacterial regulatory protein HTH signature IPR000551 MerR-type HTH domain 45 65 2.9E-13
PRINTS PR00040 MerR bacterial regulatory protein HTH signature IPR000551 MerR-type HTH domain 11 22 2.9E-13
SUPERFAMILY SSF46955 Putative DNA-binding domain IPR009061 Putative DNA-binding domain superfamily 10 132 3.0E-28
Pfam PF09278 MerR, DNA binding IPR015358 Transcription regulator MerR, DNA binding 52 117 1.1E-15
Pfam PF00376 MerR family regulatory protein IPR000551 MerR-type HTH domain 11 47 1.3E-12
Gene3D G3DSA:1.10.1660.10 - - - 2 133 2.1E-35
PRINTS PR00040 MerR bacterial regulatory protein HTH signature IPR000551 MerR-type HTH domain 22 35 2.9E-13

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.