Pseudomonas aeruginosa PAO1, PA3068 (gdhB)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Upstream Motifs
*Up to 500bp upstream
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| transcriptional initiation site (+1) | 3441633 | 3441633 | - |
|
11133942 | Details |
| -10 region | 3441642 | 3441647 | - |
|
11133942 | Details |
| ArgR site | 3441664 | 3441706 | - |
|
11133942 | Details |
| -35 region | 3441666 | 3441671 | - |
|
11133942 | Details |
| putative ArgR binding site upstream of gdhB | 3441666 | 3441707 | - |
|
11133942 | Details |
| gdhB promoter | 3441631 | 3441680 | - |
|
11133942 | Details |
| ArgR binding site | 3441666 | 3441707 | - |
ECO:0000314
direct assay evidence used in manual assertion |
16238634 | Details |
| Shine-Dalgarno sequence | 3441448 | 3441451 | - |
ECO:0000256
match to sequence model evidence used in automatic assertion |
Details |
Motifs annotated in this feature
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| Inverted repeat: CGGCCTGCAC-N93-GTGCAGGCCG | 3437873 | 3437985 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |
| Inverted repeat: CTCGGCCTGG-N100-CCAGGCCGAG | 3438828 | 3438947 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |
Downstream motifs
*Up to 500bp downstream
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| Inverted repeat: AAGAGCCCCGC-N6-GCGGGGCTCTT | 3436528 | 3436555 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |
| Rho-independent transcription terminator TERM 767 | 3436530 | 3436553 | - |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
17313685 | Details |