Pseudomonas aeruginosa PAO1, PA3477 (rhlR)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Upstream Motifs
*Up to 500bp upstream
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| lux-box-like sequence (lasR binding site) | 3890721 | 3890740 | - |
|
9150205 | Details |
| putative LasR-operator upstream of rhlR | 3890651 | 3890745 | - |
|
9150205 | Details |
| rhlR promoter P1 | 3890670 | 3890719 | - |
|
Details | |
| las-box 2 upstream of rhlR gene | 3890783 | 3891032 | - |
|
Details | |
| P1 transcription initiation site | 3890674 | 3890674 | - |
|
14600219 | Details |
| P2 transcription initiation site | 3890681 | 3890681 | - |
|
14600219 | Details |
| P3 transcription initiation site | 3890810 | 3890810 | - |
|
14600219 | Details |
| P4 transcription initiation site | 3890874 | 3890874 | - |
|
14600219 | Details |
| LasR binding site | 3891015 | 3891030 | - |
ECO:0000314
direct assay evidence used in manual assertion |
21719541 | Details |
| LasR binding site | 3890707 | 3890722 | - |
ECO:0000314
direct assay evidence used in manual assertion |
21719541 | Details |
| LasR binding site | 3890753 | 3890768 | - |
ECO:0000314
direct assay evidence used in manual assertion |
19682264 | Details |
| Vfr binding site | 3890857 | 3890874 | - |
ECO:0000314
direct assay evidence used in manual assertion |
21719541 | Details |
| Vfr binding site | 3890708 | 3890726 | - |
ECO:0000314
direct assay evidence used in manual assertion |
21719541 | Details |
| Vfr binding site | 3890762 | 3890780 | - |
ECO:0000314
direct assay evidence used in manual assertion |
21719541 | Details |
| Vfr binding site | 3890812 | 3890830 | - |
ECO:0000314
direct assay evidence used in manual assertion |
21719541 | Details |
Downstream motifs
*Up to 500bp downstream
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| transcriptional initiation site (+1) | 3889844 | 3889844 | - |
|
10570171 | Details |
| -10 region | 3889854 | 3889859 | - |
|
10570171 | Details |
| -35 region | 3889874 | 3889879 | - |
|
10570171 | Details |
| las-box-like sequence (lasR binding site) | 3889879 | 3889898 | - |
|
10570171 | Details |
| AlgR binding site | 3889863 | 3889872 | - |
|
17766417 | Details |
| LasR binding site | 3889881 | 3889899 | - |
ECO:0000314
direct assay evidence used in manual assertion |
12076794 | Details |
| AlgR binding site | 3889859 | 3889878 | - |
ECO:0000314
direct assay evidence used in manual assertion |
17766417 | Details |
| RpoN binding site | 3889872 | 3889888 | - |
ECO:0000314
direct assay evidence used in manual assertion |
19445690 | Details |
| Inverted repeat: AGGGCGCGCCG-N2-CGGCGCGCCCT | 3889896 | 3889919 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |
| Shine-Dalgarno sequence | 3889752 | 3889754 | - |
ECO:0000256
match to sequence model evidence used in automatic assertion |
Details |