Strain |
Pseudomonas aeruginosa PAO1 (Stover et al., 2000)
GCF_000006765.1|latest |
Locus Tag |
PA4268
|
Name |
rpsL
Synonym: str |
Replicon | chromosome |
Genomic location | 4771756 - 4772127 (- strand) |
Transposon Mutants | 1 transposon mutants in PAO1 |
RefSeq | NP_252958.1 |
GI | 15599464 |
Affymetrix | PA4268_rpsL_at |
DNASU | PaCD00007852 |
Entrez | 881709 |
GenBank | AAG07656.1 |
INSDC | AAG07656.1 |
NCBI Locus Tag | PA4268 |
protein_id(GenBank) | gb|AAG07656.1|AE004842_5|gnl|PseudoCAP|PA4268 |
TIGR | NTL03PA04269 |
UniParc | UPI0000134C69 |
UniProtKB Acc | Q9HWD0 |
UniProtKB ID | RS12_PSEAE |
UniRef100 | UniRef100_A6UZI3 |
UniRef50 | UniRef50_P61941 |
UniRef90 | UniRef90_A6W397 |
Feature Type | CDS |
Coding Frame | 1 |
Product Name |
30S ribosomal protein S12
|
Synonyms | |
Evidence for Translation |
Detected by two-dimensional gel electrophoresis and mass spectral analysis(PMID:21863142).
Identified using nanoflow high-pressure liquid chromatography (HPLC) in conjunction with microelectrospray ionization on LTQ XL mass spectrometer (PMID:24291602).
|
Charge (pH 7) | 20.61 |
Kyte-Doolittle Hydrophobicity Value | -0.818 |
Molecular Weight (kDa) | 13.8 |
Isoelectric Point (pI) | 11.60 |
Individual Mappings | |
Additional evidence for subcellular localization |
Accession | Header | Accession Date | Compound | Source | Resolution | Method | Percent Identity |
7UNW | RIBOSOME | 04/11/22 | Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-B) | Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT | 2.6 | ELECTRON MICROSCOPY | 100.0 |
6SPF | RIBOSOME | 09/01/19 | Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate | Pseudomonas aeruginosa | 2.89 | ELECTRON MICROSCOPY | 100.0 |
7UNR | RIBOSOME | 04/11/22 | Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-A) | Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT | 2.9 | ELECTRON MICROSCOPY | 100.0 |
7UNU | RIBOSOME | 04/11/22 | Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-B) | Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT | 2.9 | ELECTRON MICROSCOPY | 100.0 |
6SPC | RIBOSOME | 09/01/19 | Pseudomonas aeruginosa 30s ribosome from an aminoglycoside resistant clinical isolate | Pseudomonas aeruginosa | 2.95 | ELECTRON MICROSCOPY | 100.0 |
6SPE | RIBOSOME | 09/01/19 | Pseudomonas aeruginosa 30s ribosome from a clinical isolate | Pseudomonas aeruginosa | 3.6 | ELECTRON MICROSCOPY | 100.0 |
6SPG | RIBOSOME | 09/01/19 | Pseudomonas aeruginosa 70s ribosome from a clinical isolate | Pseudomonas aeruginosa | 3.34 | ELECTRON MICROSCOPY | 100.0 |
7UNV | RIBOSOME | 04/11/22 | Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-A) | Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT | 2.7 | ELECTRON MICROSCOPY | 100.0 |
Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 660 genera
|
Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
Pseudomonas Ortholog Group |
POG001443 (531 members) |
Putative Inparalogs | None Found |
STRING database | Search for predicted protein-protein interactions using:
Search term: PA4268
Search term: rpsL
Search term: 30S ribosomal protein S12
|
Ensembl
110, assembly
GRCh38.p14
|
mitochondrial ribosomal protein S12 [Source:HGNC Symbol;Acc:HGNC:10380]
E-value:
9.5e-21
Percent Identity:
49.5
|
Ensembl
110, assembly
GRCh38.p14
|
mitochondrial ribosomal protein S12 [Source:HGNC Symbol;Acc:HGNC:10380]
E-value:
9.5e-21
Percent Identity:
49.5
|
Ensembl
110, assembly
GRCh38.p14
|
mitochondrial ribosomal protein S12 [Source:HGNC Symbol;Acc:HGNC:10380]
E-value:
9.5e-21
Percent Identity:
49.5
|
Ensembl
110, assembly
GRCh38.p14
|
mitochondrial ribosomal protein S12 [Source:HGNC Symbol;Acc:HGNC:10380]
E-value:
9.5e-21
Percent Identity:
49.5
|
Ensembl
110, assembly
GRCh38.p14
|
mitochondrial ribosomal protein S12 [Source:HGNC Symbol;Acc:HGNC:10380]
E-value:
9.5e-21
Percent Identity:
49.5
|
Ensembl
110, assembly
GRCh38.p14
|
mitochondrial ribosomal protein S12 [Source:HGNC Symbol;Acc:HGNC:10380]
E-value:
9.5e-21
Percent Identity:
49.5
|
The nucleotide sequence of rpsL and its flanking regions in Salmonella typhimurium.
Hughes D, Buckingham RH
Gene 1991 Jul 31;104(1):123-4
PubMed ID: 1916272
|
Mutant sequences in the rpsL gene of Escherichia coli B/r: mechanistic implications for spontaneous and ultraviolet light mutagenesis.
Timms AR, Steingrimsdottir H, Lehmann AR, Bridges BA
Mol Gen Genet 1992 Mar;232(1):89-96
PubMed ID: 1552908
|
Modelling in Escherichia coli of mutations in mitoribosomal protein S12: novel mutant phenotypes of rpsL.
Toivonen JM, Boocock MR, Jacobs HT
Mol Microbiol 1999 Mar;31(6):1735-46
PubMed ID: 10209746
|
Comparisons of Two Proteomic Analyses of Non-Mucoid and Mucoid Pseudomonas aeruginosa Clinical Isolates from a Cystic Fibrosis Patient.
Rao J, Damron FH, Basler M, Digiandomenico A, Sherman NE, Fox JW, Mekalanos JJ, Goldberg JB
Front Microbiol 2011;2:162
PubMed ID: 21863142
|