Pseudomonas aeruginosa PAO1, PA4600 (nfxB)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Upstream Motifs
*Up to 500bp upstream
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| NfxB binding site | 5155410 | 5155512 | + |
|
7592337 | Details |
| transcriptional initiation site (+1) | 5155430 | 5155430 | + |
|
7592337 | Details |
| translational start site (ATG) - alternative | 5155560 | 5155560 | + |
|
7592337 | Details |
| nfxB promoter fragment | 5155421 | 5155451 | + |
|
7592337 | Details |
| NfxB protected fragment upstream of nfxB gene | 5155411 | 5155513 | + |
|
7592337 | Details |
| VqsM binding site | 5155475 | 5155489 | + |
ECO:0000314
direct assay evidence used in manual assertion |
25034696 | Details |
| Shine-Dalgarno sequence | 5155551 | 5155553 | + |
ECO:0000256
match to sequence model evidence used in automatic assertion |
Details |
Downstream motifs
*Up to 500bp downstream
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| Shine-Dalgarno sequence | 5156354 | 5156357 | + |
ECO:0000256
match to sequence model evidence used in automatic assertion |
Details |