Pseudomonas aeruginosa PAO1, PA4723

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Biological Process	GO:0051055	negative regulation of lipid biosynthetic process	IDA Inferred from Direct Assay	ECO:0000314 direct assay evidence used in manual assertion	11160083	Reviewed by curator
Biological Process	GO:2000679	positive regulation of transcription regulatory region DNA binding	IMP Inferred from Mutant Phenotype	ECO:0000015 mutant phenotype evidence	15853892	Reviewed by curator
Biological Process	GO:0050896	response to stimulus	ISS Inferred from Sequence or Structural Similarity	ECO:0000044 sequence similarity evidence
Biological Process	GO:0006979	response to oxidative stress	IGI Inferred from Genetic Interaction	ECO:0006091	35729352	Reviewed by curator
Molecular Function	GO:0070063	RNA polymerase binding	IDA Inferred from Direct Assay	ECO:0000314 direct assay evidence used in manual assertion	21255113	Reviewed by curator
Biological Process	GO:1901857	positive regulation of cellular respiration	IMP Inferred from Mutant Phenotype	ECO:0000015 mutant phenotype evidence	18203836	Reviewed by curator
Biological Process	GO:0045892	negative regulation of transcription, DNA-templated	IMP Inferred from Mutant Phenotype	ECO:0000015 mutant phenotype evidence	15853892	Reviewed by curator
Biological Process	GO:0045861	negative regulation of proteolysis	IDA Inferred from Direct Assay	ECO:0000314 direct assay evidence used in manual assertion	11160083	Reviewed by curator
Molecular Function	GO:0008270	zinc ion binding	ISM Inferred from Sequence Model Term mapped from: InterPro:PF01258	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other PAO1 genes in this class DNA replication, recombination, modification and repair Other PAO1 genes in this class Adaptation, Protection Other PAO1 genes in this class

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
PANTHER	PTHR33823	RNA POLYMERASE-BINDING TRANSCRIPTION FACTOR DKSA-RELATED	-	-	29	145	2.9E-35
PRINTS	PR00618	DksA/TraR zinc finger signature	IPR020460	Zinc finger, DksA/TraR C4-type, bacteria	111	122	7.6E-5
SUPERFAMILY	SSF109635	DnaK suppressor protein DksA, alpha-hairpin domain	IPR037187	DksA, N-terminal domain superfamily	11	106	6.8E-34
NCBIfam	TIGR02420	JCVI: RNA polymerase-binding protein DksA	IPR012784	RNA polymerase-binding transcription factor DksA	29	137	2.6E-51
MobiDBLite	mobidb-lite	consensus disorder prediction	-	-	1	23	-
Gene3D	G3DSA:1.20.120.910	-	-	-	2	148	5.2E-42
MobiDBLite	mobidb-lite	consensus disorder prediction	-	-	1	18	-
Pfam	PF01258	Prokaryotic dksA/traR C4-type zinc finger	IPR000962	Zinc finger, DksA/TraR C4-type	108	140	8.4E-11
Hamap	MF_00926	RNA polymerase-binding transcription factor DksA [dksA].	IPR012784	RNA polymerase-binding transcription factor DksA	25	147	31.0874
SUPERFAMILY	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)	-	-	108	145	2.71E-10
PRINTS	PR00618	DksA/TraR zinc finger signature	IPR020460	Zinc finger, DksA/TraR C4-type, bacteria	123	135	7.6E-5
FunFam	G3DSA:1.20.120.910:FF:000001	RNA polymerase-binding transcription factor DksA	-	-	2	148	1.6E-80
Coils	Coil	Coil	-	-	86	106	-

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.