Pseudomonas aeruginosa PAO1, PA5261 (algR)

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Biological Process	GO:0043107	type IV pilus-dependent motility	IMP Inferred from Mutant Phenotype	ECO:0000016 loss-of-function mutant phenotype evidence	17158671	Reviewed by curator
Biological Process	GO:0071978	bacterial-type flagellum-dependent swarming motility	IMP Inferred from Mutant Phenotype	ECO:0000016 loss-of-function mutant phenotype evidence	17158671	Reviewed by curator
Biological Process	GO:1901031	regulation of response to reactive oxygen species	IMP Inferred from Mutant Phenotype	ECO:0000015 mutant phenotype evidence	12379685	Reviewed by curator
Biological Process	GO:1900192	positive regulation of single-species biofilm formation	IMP Inferred from Mutant Phenotype	ECO:0000015 mutant phenotype evidence	3108855	Reviewed by curator
Biological Process	GO:2000147	positive regulation of cell motility	IMP Inferred from Mutant Phenotype	ECO:0000015 mutant phenotype evidence	12379685	Reviewed by curator
Biological Process	GO:0000160	phosphorelay signal transduction system	ISM Inferred from Sequence Model Term mapped from: InterPro:PF00072	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0003677	DNA binding	ISM Inferred from Sequence Model Term mapped from: InterPro:SM00850	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Two-component regulatory systems Other PAO1 genes in this class Secreted Factors (toxins, enzymes, alginate) Other PAO1 genes in this class Transcriptional regulators Other PAO1 genes in this class

Pathways

Database	Xref	Pathway	Version	Evidence	PMID
PseudoCAP		Two-component System		ECO:0000037 not_recorded
KEGG	pae02020	Two-component system	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
PseudoCAP		Alginate biosynthesis		ECO:0000037 not_recorded

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
CDD	cd17532	REC_LytTR_AlgR-like	-	-	3	121	6.83778E-54
Gene3D	G3DSA:3.40.50.2300	-	-	-	1	125	9.4E-34
Gene3D	G3DSA:2.40.50.1020	-	-	-	138	247	7.5E-15
SMART	SM00850	LytTR_3	IPR007492	LytTR DNA-binding domain	148	246	8.0E-25
FunFam	G3DSA:3.40.50.2300:FF:000134	Autolysin response regulator LytR	-	-	1	129	1.6E-56
SUPERFAMILY	SSF52172	CheY-like	IPR011006	CheY-like superfamily	1	122	9.11E-34
FunFam	G3DSA:2.40.50.1020:FF:000002	DNA-binding response regulator AlgR	-	-	139	247	3.9E-62
Pfam	PF00072	Response regulator receiver domain	IPR001789	Signal transduction response regulator, receiver domain	3	113	4.8E-27
Pfam	PF04397	LytTr DNA-binding domain	IPR007492	LytTR DNA-binding domain	149	245	4.8E-21
PANTHER	PTHR48111	REGULATOR OF RPOS	IPR039420	Transcriptional regulatory protein WalR-like	1	221	9.8E-26
SMART	SM00448	REC_2	IPR001789	Signal transduction response regulator, receiver domain	1	113	6.8E-32

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.