Pseudomonas aeruginosa PAO1, PA5388 (caiX)

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Biological Process	GO:0015879	carnitine transport	IMP Inferred from Mutant Phenotype	ECO:0000015 mutant phenotype evidence	19919675	Reviewed by curator
Cellular Component	GO:0042597	periplasmic space	IDA Inferred from Direct Assay	ECO:0000314 direct assay evidence used in manual assertion	19919675	Reviewed by curator
Biological Process	GO:0015879	carnitine transport	IMP Inferred from Mutant Phenotype	ECO:0000315 mutant phenotype evidence used in manual assertion	19406895	Reviewed by curator
Biological Process	GO:0042413	carnitine catabolic process	IMP Inferred from Mutant Phenotype	ECO:0000015 mutant phenotype evidence	19406895	Reviewed by curator
Molecular Function	GO:0015418	ATPase-coupled quaternary ammonium compound transmembrane transporting activity	IDA Inferred from Direct Assay	ECO:0000314 direct assay evidence used in manual assertion	19919675	Reviewed by curator
Cellular Component	GO:0043190	ATP-binding cassette (ABC) transporter complex	IDA Inferred from Direct Assay	ECO:0000314 direct assay evidence used in manual assertion	19919675	Reviewed by curator
Molecular Function	GO:0015226	carnitine transmembrane transporter activity	IDA Inferred from Direct Assay	ECO:0000314 direct assay evidence used in manual assertion	19919675	Reviewed by curator
Biological Process	GO:0015879	carnitine transport	IDA Inferred from Direct Assay	ECO:0000314 direct assay evidence used in manual assertion	19919675	Reviewed by curator
Molecular Function	GO:0005275	amine transmembrane transporter activity	IDA Inferred from Direct Assay	ECO:0000314 direct assay evidence used in manual assertion	19919675	Reviewed by curator
Molecular Function	GO:0033265	choline binding	ISM Inferred from Sequence Model Term mapped from: InterPro:cd13640	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0055085	transmembrane transport	ISM Inferred from Sequence Model Term mapped from: InterPro:PF04069	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Cellular Component	GO:0042597	periplasmic space	ISM Inferred from Sequence Model Term mapped from: InterPro:cd13640	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0015871	choline transport	ISM Inferred from Sequence Model Term mapped from: InterPro:cd13640	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Cellular Component	GO:0043190	ATP-binding cassette (ABC) transporter complex	ISM Inferred from Sequence Model Term mapped from: InterPro:PF04069	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0022857	transmembrane transporter activity	ISM Inferred from Sequence Model Term mapped from: InterPro:PF04069	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transport of small molecules Other PAO1 genes in this class Carbon compound catabolism Other PAO1 genes in this class

Pathways

Database	Xref	Pathway	Version	Evidence	PMID
KEGG	pae02010	ABC transporters	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
Gene3D	G3DSA:3.40.190.10	-	-	-	31	292	1.5E-90
NCBIfam	TIGR03414	JCVI: choline ABC transporter substrate-binding protein	IPR017783	Choline ABC transporter, substrate-binding protein	22	310	0.0
Pfam	PF04069	Substrate binding domain of ABC-type glycine betaine transport system	IPR007210	ABC-type glycine betaine transport system, substrate-binding domain	30	283	3.3E-54
SUPERFAMILY	SSF53850	Periplasmic binding protein-like II	-	-	23	299	8.96E-77
FunFam	G3DSA:3.40.190.100:FF:000002	Choline ABC transporter substrate-binding protein	-	-	113	222	5.6E-60
Gene3D	G3DSA:3.40.190.100	-	-	-	113	222	1.5E-90
CDD	cd13640	PBP2_ChoX	IPR017783	Choline ABC transporter, substrate-binding protein	30	295	0.0

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.