Pseudomonas aeruginosa PAO1, PA5410 (gbcA)

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Molecular Function	GO:0051537	2 iron, 2 sulfur cluster binding	ISS Inferred from Sequence or Structural Similarity	ECO:0000250 sequence similarity evidence used in manual assertion	17951379	Reviewed by curator
Biological Process	GO:0031457	glycine betaine catabolic process	IMP Inferred from Mutant Phenotype	ECO:0000015 mutant phenotype evidence	17951379	Reviewed by curator
Molecular Function	GO:0005506	iron ion binding	ISM Inferred from Sequence Model Term mapped from: InterPro:PF00848	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0044237	cellular metabolic process	ISM Inferred from Sequence Model Term mapped from: InterPro:PR00090	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0051537	2 iron, 2 sulfur cluster binding	ISM Inferred from Sequence Model Term mapped from: InterPro:PR00090	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Amino acid biosynthesis and metabolism Other PAO1 genes in this class

Pathways

Database	Xref	Pathway	Version	Evidence	PMID
PseudoCAP		glycine betaine catabolism		ECO:0000037 not_recorded
PseudoCAP		Aromatic compound catabolism		ECO:0000037 not_recorded

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
CDD	cd08884	RHO_alpha_C_GbcA-like	-	-	185	412	9.22991E-106
SUPERFAMILY	SSF50022	ISP domain	IPR036922	Rieske [2Fe-2S] iron-sulphur domain superfamily	24	167	4.71E-44
Gene3D	G3DSA:3.90.380.10	-	-	-	31	408	0.0
Pfam	PF00848	Ring hydroxylating alpha subunit (catalytic domain)	IPR015879	Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain	189	412	1.1E-37
Pfam	PF00355	Rieske [2Fe-2S] domain	IPR017941	Rieske [2Fe-2S] iron-sulphur domain	56	131	1.0E-16
PRINTS	PR00090	Ring hydroxylating dioxygenase alpha-subunit signature	IPR001663	Aromatic-ring-hydroxylating dioxygenase, alpha subunit	40	65	1.8E-27
PRINTS	PR00090	Ring hydroxylating dioxygenase alpha-subunit signature	IPR001663	Aromatic-ring-hydroxylating dioxygenase, alpha subunit	152	178	1.8E-27
PRINTS	PR00090	Ring hydroxylating dioxygenase alpha-subunit signature	IPR001663	Aromatic-ring-hydroxylating dioxygenase, alpha subunit	70	85	1.8E-27
PRINTS	PR00090	Ring hydroxylating dioxygenase alpha-subunit signature	IPR001663	Aromatic-ring-hydroxylating dioxygenase, alpha subunit	91	111	1.8E-27
Gene3D	G3DSA:2.102.10.10	-	IPR036922	Rieske [2Fe-2S] iron-sulphur domain superfamily	53	172	0.0
CDD	cd03469	Rieske_RO_Alpha_N	-	-	56	171	8.40239E-48
SUPERFAMILY	SSF55961	Bet v1-like	-	-	168	416	3.38E-53
PRINTS	PR00090	Ring hydroxylating dioxygenase alpha-subunit signature	IPR001663	Aromatic-ring-hydroxylating dioxygenase, alpha subunit	189	211	1.8E-27
FunFam	G3DSA:2.102.10.10:FF:000020	Aromatic ring-hydroxylating dioxygenase subunit alpha	-	-	53	172	9.2E-82
PANTHER	PTHR43756	CHOLINE MONOOXYGENASE, CHLOROPLASTIC	IPR001663	Aromatic-ring-hydroxylating dioxygenase, alpha subunit	17	419	1.7E-83
PRINTS	PR00090	Ring hydroxylating dioxygenase alpha-subunit signature	IPR001663	Aromatic-ring-hydroxylating dioxygenase, alpha subunit	112	132	1.8E-27

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.