Pseudomonas aeruginosa PAO1, PA5164 (rmlC)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Operons

Operon name: rmlBDAC operon (4 gene members)
Experiment Attributes
method: expression of rmlB-lacZ
Locus Tag Gene Name Description Start End Strand Type
PA5161 rmlB dTDP-D-glucose 4,6-dehydratase 5810281 5811339 + CDS
Gene Details
PA5162 rmlD dTDP-4-dehydrorhamnose reductase 5811336 5812244 + CDS
Gene Details
PA5163 rmlA glucose-1-phosphate thymidylyltransferase 5812241 5813122 + CDS
Gene Details
PA5164 rmlC dTDP-4-dehydrorhamnose 3,5-epimerase 5813122 5813667 + CDS
Gene Details
Evidence
Transcription unit experimentally validated in a strain of the same species. The start coordinate will often be based on an experimentally validated transcription start site. For protein-coding genes, unless otherwise specified, the stop will be based on the stop codon.
References
The Pseudomonas aeruginosa rmlBDAC operon, encoding dTDP-L-rhamnose biosynthetic enzymes, is regulated by the quorum-sensing transcriptional regulator RhlR and the alternative sigma factor σS.
Aguirre-Ramírez M, Medina G, González-Valdez A, Grosso-Becerra V, Soberón-Chávez G
Microbiology (Reading, Engl.) 2012 Apr;158(Pt 4):908-16
PubMed ID: 22262098
Cross-References
PseudoCAP: 41698
Operon name: rmlBDAC operon (4 gene members)
Locus Tag Gene Name Description Start End Strand Type
PA5161 rmlB dTDP-D-glucose 4,6-dehydratase 5810281 5811339 + CDS
Gene Details
PA5162 rmlD dTDP-4-dehydrorhamnose reductase 5811336 5812244 + CDS
Gene Details
PA5163 rmlA glucose-1-phosphate thymidylyltransferase 5812241 5813122 + CDS
Gene Details
PA5164 rmlC dTDP-4-dehydrorhamnose 3,5-epimerase 5813122 5813667 + CDS
Gene Details
Evidence
Transcription unit experimentally validated in a strain of the same species. The start coordinate will often be based on an experimentally validated transcription start site. For protein-coding genes, unless otherwise specified, the stop will be based on the stop codon.
References
The Pseudomonas aeruginosa rmlBDAC operon, encoding dTDP-L-rhamnose biosynthetic enzymes, is regulated by the quorum-sensing transcriptional regulator RhlR and the alternative sigma factor σS.
Aguirre-Ramírez M, Medina G, González-Valdez A, Grosso-Becerra V, Soberón-Chávez G
Microbiology (Reading, Engl.) 2012 Apr;158(Pt 4):908-16
PubMed ID: 22262098
Cross-References
PseudoCAP: 41699
Operon name: rmlB-rmlD-rmlA-rmlC (3 gene members)
Locus Tag Gene Name Description Start End Strand Type
PA5162 rmlD dTDP-4-dehydrorhamnose reductase 5811336 5812244 + CDS
Gene Details
PA5163 rmlA glucose-1-phosphate thymidylyltransferase 5812241 5813122 + CDS
Gene Details
PA5164 rmlC dTDP-4-dehydrorhamnose 3,5-epimerase 5813122 5813667 + CDS
Gene Details
Evidence
Computationally-predicted.
References
DOOR: a database for prokaryotic operons.
Mao F, Dam P, Chou J, Olman V, Xu Y
Nucleic Acids Res. 2009 Jan;37(Database issue):D459-63
PubMed ID: 18988623
Cross-References
DOOR: 14173