Pseudomonas aeruginosa PAO1, PA0048

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse View in GBrowse PseudoCyc / Metabolic Pathways

Gene Feature Overview

Strain Pseudomonas aeruginosa PAO1 (Reference)
Locus Tag
PA0048
Name
Replicon chromosome
Genomic location 62403 - 62786 (- strand)
Transposon Mutants 2 transposon mutants in PAO1
Transposon Mutants in orthologs 1 transposon mutants in orthologs

Cross-References

RefSeq NP_248738.1
GI 15595246
Affymetrix PA0048_at
Entrez 877666
GenBank AAG03438.1
INSDC AAG03438.1
NCBI Locus Tag PA0048
protein_id(GenBank) gb|AAG03438.1|AE004444_7|gnl|PseudoCAP|PA0048
TIGR NTL03PA00049
UniParc UPI00000C4F02
UniProtKB Acc Q9I784
UniProtKB ID Q9I784_PSEAE
UniRef100 UniRef100_W1MX70
UniRef50 UniRef50_B7V0T5
UniRef90 UniRef90_B7V0T5

Product

Feature Type CDS
Coding Frame 1
Product Name
probable transcriptional regulator
Product Name Confidence: Class 3
Evidence for Translation
Charge (pH 7) 5.41
Kyte-Doolittle Hydrophobicity Value -0.302
Molecular Weight (kDa) 14.4
Isoelectric Point (pI) 10.56

Subcellular localization

Individual Mappings
Localization Confidence PMID
Unknown Class 3
Additional evidence for subcellular localization

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 27 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000048 (305 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PA0048

Transposon Insertions in PAO1

Type Confirmed ISlacZ/hah insertion site
Mutant ID UWGC: 16954
Genomic Position 62590
Position in ORF 188(384)
Reference 14617778
Type Confirmed ISphoA/hah insertion site
Mutant ID UWGC: 53236
Genomic Position 62436
Position in ORF 34(384)
Reference 14617778

Transposon Insertions in Orthologs

Type MAR2xT7 transposon (wild type background) insertion site
Strain Pseudomonas aeruginosa UCBPP-PA14
Locus Tag PA14_00600
Mutant ID PA14NR: 34063
Genomic Position 60838
Position in ORF 74(384)
Reference 16477005

References

No references are associated with this feature.